崇明东滩鸟类栖息地优化区越冬水鸟的栖息地利用及影响因子

阐明水鸟栖息地利用与环境因子的关系有助于制定针对性的水鸟保护对策。本研究在2012~2013年冬季对崇明东滩鸟类栖息地优化区内越冬水鸟的种类、数量以及6种环境因子(植被面积比例、裸地面积比例、水深、地形变异、栖息地结构多样性和干扰)进行调查,以了解水鸟对人工湿地的栖息地利用及其影响因子。野外调查共记录到水鸟24种9 018只,其中优势种为斑嘴鸭(Anas poecilorhyncha)和绿头鸭(A.platyrhynchos);栖息地优化区内水鸟休息的个体数量占总数量的79.2%,这表明优化区是大多数水鸟的休息地,而小(Tachybaptus ruficollis)、白骨顶(Fulica atra)、黑水鸡(Gallinula chloropus)、白琵鹭(Platalea leucorodia)和黑脸琵鹭(P.minor)的觅食个体数量超过60%,说明优化区也为这些鸟类提供了觅食地。逐步回归分析表明,裸地面积比例是影响越冬水鸟种类分布的最主要因子;尽管游禽在地形变异较大、植被面积比例较低的区域数量较多,但在休息时游禽更偏好于裸地面积比例较高的区域,而涉禽休息时偏好于地形变异较大的区域。为增加栖息地优化区内的水鸟多样性,建议在优化区内种植水鸟可食的沉水植物以增加水鸟的食物资源,同时增加裸地面积比例和地形变异程度,更好地为水鸟提供栖息地。     

Apelin-36, a potent peptide,protects against ischemic brain injury by activating the PI3K/Akt pathway

Apelin is an endogenous ligand of G protein-coupled receptor-apelin and angiotensin-1-like receptor (APJ). The biological effects of apelin–APJ system are reported in multiple systems including cardiovascular, endocrinal, and gastrointestinal system. Previous studies had shown that apelin-13 is a potential protective agent on cardiac ischemia; however, the role of apelin in the central nervous system remained unknown. In this study, we investigated therapeutic effects of apelin-36, a long form of apelin, in ischemic brain injury models. We found that apelin-36 reduced cerebral infarct volume in the middle cerebral artery occlusion (MCAO) model and the neonatal hypoxic/ischemic (H/I) injury model. Apelin-36 improved neurological deficits in the MCAO model and promoted long-term functional recovery after H/I brain injury. We further explored the protective mechanisms of apelin-36 on H/I brain injury. We clearly demonstrated that apelin-36 significantly reduced the levels of cleaved caspase-3 and Bax, two well-established apoptotic markers after H/I injury, indicating the anti-apoptotic activity of apelin-36 in ischemic injury. Since apelin-36 increased the level of phosphorylated Akt after H/I injury, we treated neonates with a specific PI3K inhibitor LY294002. We found that LY294002 decreased the phosphorylated Akt level and attenuated protective effects of apelin-36 on apoptosis. These suggested that the PI3K/Akt pathway was at least in part involved in the anti-apoptotic mechanisms of apelin-36. Our findings demonstrated that apelin-36 was a promising therapeutic agent on the treatment of ischemic brain injury.     

基于全基因组数据华根霉产真菌毒素分析

【目的】在对中国传统优势浓香型白酒产业中重要功能微生物华根霉菌株CCTCCM201021全基因组测序的基础上,以生物信息学的方法和手段主要针对真菌毒素的合成代谢途径及关键基因进行分析,考察微生物在食品工业应用中的安全性。【方法】应用Illumina平台Solexa测序技术对华根霉进行基因组测序,运用SOAPdenovo组装软件进行拼接,并进行一系列生物信息分析,考察根霉素、小孢根霉素及典型丝状真菌毒素代谢的主要途径及相关基因,包括PKS、NRPS与PKS-NRPS混合代谢途径;萜类化合物代谢和其他代谢途径等,判断华根霉是否具有产真菌毒素的潜在危害性。【结果】测序结果表明华根霉全基因组大小为45.70 Mb左右,GC含量为36.99%。通过基因预测软件分析得到基因17 676个,共注释基因13 243个。通过进化树与同源基因比较分析,与目前基因组测序完成的仅有的3株接合菌基因组相比,序列相似性普遍偏低,与华根霉存在较为显著的差异,但同源基因的相似性在60%左右。代谢分析表明,华根霉中仅存在较少聚酮合成、萜类化合物合成途径代谢基因,存在大量异源物质降解途径基因。【结论】华根霉基本不具备产目前已知的真菌毒素的关键基因或合成能力,可以认为其发酵产品是相对安全的。在酿造过程中,不仅可作为糖化菌,在混菌发酵时,对部分具有抑菌能力的抗生物质具有降解功能,是发酵工业中应用的相对安全的重要生产菌。     

半导体矿物介导非光合微生物利用光电子新途径

自然界中微生物按其能量代谢途径主要分为两种:光能营养微生物和化能营养微生物.化能营养微生物作为非光能营养微生物长期被排除在以日光为能量来源的能量利用途径之外.本文介绍了一种新的微生物能量利用途径,即非光能营养微生物通过半导体矿物光催化作用来利用太阳能进行生长.实验室模拟体系中,金属氧化物、金属硫化物等天然半导体矿物在模拟日光激发下产生的光电子促进了化能自养与异养微生物的生长.研究结果表明微生物的生长与光子能量和光子数量密切相关,同时不同波长光辐照下的微生物生长情况与矿物的光吸收谱相吻合.这一能量利用途径的光能-生物能转化效率为0.13‰-1.90‰.在含有天然半导体矿物与天然微生物的红壤体系中,进一步发现半导体矿物光催化能够明显改变环境微生物的种群结构.已有的研究揭示了一种新发现并极有可能长期在地球上存在的微生物能量利用途径,即通过自然界中半导体矿物日光催化作用产生的光电子能够促进非光能营养微生物的生长代谢活动.     

Leukotriene D4 induces amyloid-β generation via CysLT1R-mediated NF-κB pathways in primary neurons

Although the pathogenesis of sporadic Alzheimer’s disease (AD) is not clearly understood, neuroinflammation has been known to play a role in the pathogenesis of AD. To investigate a functional link between the neuroinflammation and AD, the effect of leukotriene D4 (LTD4), an inflammatory lipid mediator, was studied on amyloid-β generation in vitro. Application of LTD4 to cell monolayers at concentrations up to 40 nM LTD4 caused increases in the Aβ releases. Concentrations ?40 nM LTD4 decreased neuronal viability. Application of 20 nM LTD4 caused a significant increase in Aβ generation, as assessed by ELISA or Western blotting, without significant cytotoxicity. At this concentration, exposure of neurons to LTD4 for 24 h produced maximal effect in the Aβ generation, and significant increases in the expressions of cysteinyl leukotriene 1 receptor (CysLT₁R) and activity of β- or γ-secretase with complete abrogation by the selective CysLT₁R antagonist pranlukast. Exposure of neurons to LTD4 for 1 h showed activation of NF-κB pathway, by assessing the levels of p65 or phospho-p65 in the nucleus, and either CysLT₁R antagonist pranlukast or NF-κB inhibitor PDTC prevented the nuclear translocation of p65 and the consequent phosphorylation. PDTC also inhibited LTD4-induced elevations of β- or γ-secretase activity and Aβ generation in vitro. Overall, our data show for the first time that LTD4 causes Aβ production by enhancement of β- or γ-secretase resulting from activation of CysLT₁R-mediated NF-κB signaling pathway. These findings provide a novel pathologic link between neuroinflammation and AD.     

Development of thermodynamic optimum searching (TOS) to improve the prediction accuracy of flux balance analysis

Flux balance analysis (FBA) has been widely used in calculating steady‐state flux distributions that provide important information for metabolic engineering. Several thermodynamics‐based methods, for example, quantitative assignment of reaction directionality and energy balance analysis have been developed to improve the prediction accuracy of FBA. However, these methods can only generate a thermodynamically feasible range, rather than the most thermodynamically favorable solution. We therefore developed a novel optimization method termed as thermodynamic optimum searching (TOS) to calculate the thermodynamically optimal solution, based on the second law of thermodynamics, the minimum magnitude of the Gibbs free energy change and the maximum entropy production principle (MEPP). Then, TOS was applied to five physiological conditions of Escherichia coli to evaluate its effectiveness. The resulting prediction accuracy was found significantly improved (10.7–48.5%) by comparing with the ¹³C‐fluxome data, indicating that TOS can be considered an advanced calculation and prediction tool in metabolic engineering. Biotechnol. Bioeng. 2013; 110: 914–923. © 2012 Wiley Periodicals, Inc.     

8-Oxoguanine DNA glycosylase 1 (ogg1) maintains the function of cardiac progenitor cells during heart formation in zebrafish

Genomic damage may devastate the potential of progenitor cells and consequently impair early organogenesis. We found that ogg1, a key enzyme initiating the base-excision repair, was enriched in the embryonic heart in zebrafish. So far, little is known about DNA repair in cardiogenesis. Here, we addressed the critical role of ogg1 in cardiogenesis for the first time. ogg1 mainly expressed in the anterior lateral plate mesoderm (ALPM), the primary heart tube, and subsequently the embryonic myocardium by in situ hybridisation. Loss of ogg1 resulted in severe cardiac morphogenesis and functional abnormalities, including the short heart length, arrhythmia, decreased cardiomyocytes and nkx2.5⁺ cardiac progenitor cells. Moreover, the increased apoptosis and repressed proliferation of progenitor cells caused by ogg1 deficiency might contribute to the heart phenotype. The microarray analysis showed that the expression of genes involved in embryonic heart tube morphogenesis and heart structure were significantly changed due to the lack of ogg1. Among those, foxh1 is an important partner of ogg1 in the cardiac development in response to DNA damage. Our work demonstrates the requirement of ogg1 in cardiac progenitors and heart development in zebrafish. These findings may be helpful for understanding the aetiology of congenital cardiac deficits.     

Dual Gating Mechanism and Function of P2X7 Receptor Channels

The ATP-gated P2X7 receptor channel (P2X7R) operates as a cytolytic and apoptotic receptor but also controls sustained cellular responses, including cell growth and proliferation. However, it has not been clarified how the same receptor mediates such opposing effects. To address this question, we have combined electrophysiological, imaging, and mathematical studies using wild-type and mutant rat P2X7Rs. Activation of naïve (not previously stimulated) receptors by low agonist concentrations caused monophasic slow desensitizing currents and internalization of receptors without other changes in the cellular morphology, much like other P2XRs. In contrast, saturating agonist concentrations induced high-amplitude biphasic currents, reflecting pore dilation and causing rapid cell swelling and lysis. The existence of these two signaling patterns was accounted for using a revised Markov-state model that included, in addition to naïve and sensitized states, desensitized states. Occupancy of one or two ATP-binding sites of naïve receptors favored a slow transition to desensitized states, whereas occupancy of the third binding site favored a transition to sensitized/dilated states. Consistent with model predictions, nondilating P2X7R mutants always generated desensitizing currents. These results suggest that the level of saturation of the ligand binding sites determines the nature of the P2X7R gating and cellular actions.     

A modified metabolic model for mixed culture fermentation with energy conserving electron bifurcation reaction and metabolite transport energy

A modified metabolic model for mixed culture fermentation (MCF) is proposed with the consideration of an energy conserving electron bifurcation reaction and the transport energy of metabolites. The production of H₂ related to NADH/NAD⁺ and Fdred/Fdox is proposed to be divided in three processes in view of energy conserving electron bifurcation reaction. This assumption could fine‐tune the intracellular redox balance and regulate the distribution of metabolites. With respect to metabolite transport energy, the proton motive force is considered to be constant, while the transport rate coefficient is proposed to be proportional to the octanol–water partition coefficient. The modeling results for a glucose fermentation in a continuous stirred tank reactor show that the metabolite distribution is consistent with the literature: (1) acetate, butyrate, and ethanol are main products at acidic pH, while the production shifts to acetate and propionate at neutral and alkali pH; (2) the main products acetate, ethanol, and butyrate shift to ethanol at higher glucose concentration; (3) the changes for acetate and butyrate are following an increasing hydrogen partial pressure. The findings demonstrate that our modified model is more realistic than previous proposed model concepts. It also indicates that inclusion of an energy conserving electron bifurcation reaction and metabolite transport energy for MCF is sound in the viewpoint of biochemistry and physiology. Biotechnol. Bioeng. 2013; 110: 1884–1894. © 2013 Wiley Periodicals, Inc.     

2‐(Undecyloxy)‐ethanol is a major component of the male‐produced aggregation pheromone of Monochamus sutor

The small white‐marmorated longicorn beetle, Monochamus sutor (L.) (Coleoptera: Cerambycidae), is widely distributed throughout Europe and Asia. It is a potential vector of the pine wood nematode, Bursaphelenchus xylophilus (Steiner et Buhrer) Nickle, the causal agent of the devastating pine wilt disease. Volatiles were collected from both male and female beetles after maturation feeding. In analyses of these collections using gas chromatography (GC) coupled to mass spectrometry, a single male‐specific compound was detected and identified as 2‐(undecyloxy)‐ethanol. In analyses by GC coupled to electroantennography the only consistent responses from both female and male antennae were to this compound. Trapping tests were carried out in Spain, Sweden, and China. 2‐(Undecyloxy)‐ethanol was attractive to both male and female M. sutor beetles. A blend of the bark beetle pheromones ipsenol, ipsdienol, and 2‐methyl‐3‐buten‐2‐ol was also attractive to both sexes in Spain and Sweden, and further increased the attractiveness of the 2‐(undecyloxy)‐ethanol. The host plant volatiles α‐pinene, 3‐carene, and ethanol were weakly attractive, if at all, in all three countries and did not significantly increase the attractiveness of the blend of 2‐(undecyloxy)‐ethanol and bark beetle pheromones. 2‐(Undecyloxy)‐ethanol is thus proposed to be the major, if not only, component of the male‐produced aggregation pheromone of M. sutor, and its role is discussed. This compound has been reported as a pheromone of several other Monochamus species and is another example of the parsimony that seems to exist among the pheromones of many of the Cerambycidae. Traps baited with 2‐(undecyloxy)‐ethanol and bark beetle pheromones should be useful for monitoring and control of pine wilt disease, should M. sutor be proven to be a vector of the nematode.